merge master #30
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merge master #30
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* numpy dtype alias Signed-off-by: Wenqi Li <wenqil@nvidia.com> * is_tensor => isinstance Signed-off-by: Wenqi Li <wenqil@nvidia.com> * type of dtype Signed-off-by: Wenqi Li <wenqil@nvidia.com> * relaxes some typing constraints Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes unit tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on the comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes docstring typos Signed-off-by: Wenqi Li <wenqil@nvidia.com>
* rand_gaussian_noised with multiple keys Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * update key names Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * clear list of noise before randomising Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * add type Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * bug fix Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * use ensure_tuple_rep Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>
* [DLMED] fix TorchScript issue in AHNet Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add test cases Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix torchscript issue in PyTorch 1.5 Signed-off-by: Nic Ma <nma@nvidia.com>
* [DLMED] fix distirbuted data parallel issue in ClassificationSaver Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix min test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add @SkipIfBeforePyTorchVersion((1, 7)) Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>
* [DLMED] update SmartCacheDataset docs and warning Signed-off-by: Nic Ma <nma@nvidia.com> * isAlive => is_alive Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>
* [DLMED] fix evenly divisible issue in AUC metric Signed-off-by: Nic Ma <nma@nvidia.com>
* [DLMED] add RandLambdad transform Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add doc-strings Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] change to rtol=1e-05 Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * fixes seeds Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>
* [DLMED] fix typo in the doc-string of SegResNet Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to Yiheng's comments Signed-off-by: Nic Ma <nma@nvidia.com>
Signed-off-by: Nic Ma <nma@nvidia.com>
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
* [DLMED] fix classification saver issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance distributed tests Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>
* [DLMED] Enhance doc-string of transforms Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] optimize the numpy computation Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>
* [DLMED] add base class for TensorBoard handlers Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] enhance integration test with TensorBoard writer Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] add close method Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] Enhance MetricsSaver doc-strings Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>
* 1559 add DVF2DDF Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk> * 1559 add gradient test Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk> * update docs; test cases Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
* Add deepgrow dataset Signed-off-by: YuanTingHsieh <yuantinghsieh@gmail.com> * Fix CI/CD issue Signed-off-by: YuanTingHsieh <yuantinghsieh@gmail.com> * Fix issues based on review Signed-off-by: YuanTingHsieh <yuantinghsieh@gmail.com>
* [DLMED] change tests to use self random state Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix CI tests Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>
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Fixes # .
Description
A few sentences describing the changes proposed in this pull request.
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Types of changes
./runtests.sh --codeformat --coverage../runtests.sh --quick.make htmlcommand in thedocs/folder.