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Release 0.4.0#76

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ressy merged 107 commits intomasterfrom
release-0.4.0
Sep 7, 2022
Merged

Release 0.4.0#76
ressy merged 107 commits intomasterfrom
release-0.4.0

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@ressy ressy commented Apr 25, 2022

  • Fixed desktop icon drag-and-drop for recent Linux distributions (#85)
  • Fixed genotype summary table row ordering for certain edge cases (#81)
  • Fixed pandoc error with newer RStudio versions (>= 2022.02) by finding
    pandoc automatically (#75)
  • Made load_csv use custom row names if given (#74)
  • Made installer obey site-wide R configuration if present (#72)
  • Fixed superfluous quotes in report HTML file when rendered with newer pandoc
    (#69)
  • Fixed spurious warnings during histogram plotting due to missing data
    (#66)
  • Added option for custom text in genotype summary tables for untested
    locus/sample combinations (#64)
  • Made save_csv automatically create any parent directories as needed
    (#63)
  • Fixed handling of extra pheatmap arguments in plot_dist_mat (#62)

ressy added 30 commits July 19, 2019 11:13
Apparently setting variables doesn't work like I expected in the if/else
blocks in cmd.exe.
Configuration update for continuous integration to disable the
osx/bioc-devel combo.
Match up Travis configuration with dev so that our testing of the new
feature works as expected.
Allow arbitrary columns in CSV helpers
Incorporate hotfix from #56.
it provides the tex stuff I need like pdflatex so it does seem like the
right choice
ressy added 26 commits April 21, 2022 17:57
The optional capture group doesn't seem to work if the .exe version is
not found.  Instead we'll just use the two patterns side-by-side.
It was R, not windows!  I need to learn cat() better.
Automatically find pandoc at run-time
color-code links; clarify installation instructions; monospace all table
text and hard-code locus attrs table; mention optional
use_reverse_primer support
Including fix for #78 before releasing new version
one, zero, or unrecognized extra_cols should be handled (but currently
aren't)
Add filename field code to Linux desktop icon
Aiming to better match the suggestions in the R-exts manual (leave out
patch version for dependencies) and also bump version minimums to the
earliest reported via CircleCI tests
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ressy commented Aug 29, 2022

Tested with combinations of:

  • Windows 11 / Mac OS 10.15 / Ubuntu 20.04.4 LTS
  • R 3.6.3 / R 4.2.1
  • RStudio 2021.09 / RStudio 2022.07 / standalone Pandoc 2.19.2

@ressy ressy merged commit 229ffbd into master Sep 7, 2022
@ressy ressy deleted the release-0.4.0 branch September 7, 2022 21:09
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