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MRG, MAINT: Improve server env #8656
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Old: New: @GuillaumeFavelier I got a segfault when I tried to remove |
| - nbclient | ||
| - mffpy>=0.5.7 | ||
| - pip: | ||
| - mne |
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mne and jupyter are stuck in pip because they require / pull in PyQt5, which often breaks headless servers (anything that tries to import PyQt5 will die because Qt5 throws an error)
To fetch the version of |
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Pushed a commit for the @GuillaumeFavelier you happy? If so I'll merge when green |
GuillaumeFavelier
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LGTM
* upstream/master: (42 commits) MRG, ENH: Add DICS bias tests (mne-tools#8610) MRG, BUG, ENH: Add window option (mne-tools#8662) BUG: Fix alpha for volumes (mne-tools#8663) MRG, BUG: Fix bugs with envcorr (mne-tools#8658) MRG, ENH: Progressbar for csd_morlet (mne-tools#8608) Render is necessary now (mne-tools#8657) VIZ: Fix head size (mne-tools#8651) MRG, MAINT: bump sphinxcontrib-bitex version (mne-tools#8653) MRG, MAINT: Improve server env (mne-tools#8656) BUG: Mayavi center (mne-tools#8644) VIZ, ENH: allow show/hide annotations by label (mne-tools#8624) Add regression test for EEGLAB data with a chanlocs struct (mne-tools#8647) FIX: scalar_bar (mne-tools#8643) MRG: Small fix to tutorial; rename plot_events ordinate label to "Event id"; improve some SSP docstrings (mne-tools#8612) MRG, ENH: make plot alignment use defaults for colors (mne-tools#8553) BUG: Fix passing of channel type (mne-tools#8638) FIX: fixed loop over norm PSF/CTF options (mne-tools#8636) MRG, BUG: Pass kwargs (mne-tools#8630) DOC: Clearer error message (mne-tools#8631) BUG: Fix number of labels (mne-tools#8629) ...
* upstream/master: (38 commits) MRG, ENH: Add DICS bias tests (mne-tools#8610) MRG, BUG, ENH: Add window option (mne-tools#8662) BUG: Fix alpha for volumes (mne-tools#8663) MRG, BUG: Fix bugs with envcorr (mne-tools#8658) MRG, ENH: Progressbar for csd_morlet (mne-tools#8608) Render is necessary now (mne-tools#8657) VIZ: Fix head size (mne-tools#8651) MRG, MAINT: bump sphinxcontrib-bitex version (mne-tools#8653) MRG, MAINT: Improve server env (mne-tools#8656) BUG: Mayavi center (mne-tools#8644) VIZ, ENH: allow show/hide annotations by label (mne-tools#8624) Add regression test for EEGLAB data with a chanlocs struct (mne-tools#8647) FIX: scalar_bar (mne-tools#8643) MRG: Small fix to tutorial; rename plot_events ordinate label to "Event id"; improve some SSP docstrings (mne-tools#8612) MRG, ENH: make plot alignment use defaults for colors (mne-tools#8553) BUG: Fix passing of channel type (mne-tools#8638) FIX: fixed loop over norm PSF/CTF options (mne-tools#8636) MRG, BUG: Pass kwargs (mne-tools#8630) DOC: Clearer error message (mne-tools#8631) BUG: Fix number of labels (mne-tools#8629) ...
I really just want to add
nibabelandnilearnto ourserver_environmentbecause they are needed for some viz functions, but then I noticed some other stuff, so this PR will:nibabelandnilearnvtk_devchanneldefaultschannelnumpy<1.19.0pinHopefully it all works but if it doesn't, hopefully I can at least get (1) in there. I'll need to double-check that the env otherwise looks the same in terms of what gets installed by looking at
mne sys_info.