Cli metadata part 3, bug fixes and link well MapAnns to images#4240
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joshmoore merged 30 commits intoome:metadatafrom Dec 17, 2015
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Cli metadata part 3, bug fixes and link well MapAnns to images#4240joshmoore merged 30 commits intoome:metadatafrom
joshmoore merged 30 commits intoome:metadatafrom
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--ns for filtering by namespace --nsre for filtering by a namespace regular expression
Sooner or later you just know someone's going to put 1000+ annotations on a single object. Since the underlying BlitzGateway listAnnotations() method already returns a generator we might as well continue to use it instead of loading all annotations into memory at once.
If the bulk-annotations CSV file is for a screen and contains a plate (name) column but we are annotating a plate, then only process rows in the CSV with a matching plate (name).
Output row numbers, don't dump entire column (otherwise number of lines of output is proportional to |rows|^2)
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Config file is no longer attached in bulkmap dry-run All config files can optionally be deleted in deletemap
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Merging for IDR 0.0.3 with a warning to @emilroz and @ximenesuk about changes to populate_metadata and metadata.py. |
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Cli metadata part 3, bug fixes and link well MapAnns to images
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Originally #4062
PyYAMLPython requirement (without this the new functionality is disabled).