This now works as expected including pdf generation

What's Changed

• Devel by @sameet in #7
• Fixed more typos by @sameet in #8
• bump minor version. by @sameet in #9

New Contributors

• @sameet made their first contribution in #7

Full Changelog: v0.0.2-alpha...v0.0.3-alpha

This version works.

Full Changelog: v0.0.1-alpha...v0.0.2-alpha

This is a working code that generates correctly formatted qmd flie. However, it is not able to generate pdf report corretly. html report is generated per expectation. In the next attempt we will try to use typst system for type-setting of the report to pdf.

First Working Code

Full Changelog: https://github.com/sameet/quartoReport/commits/v0.0.1-alpha

This is a fully working code the quartoReport. It does not yet generate a report, but it is able to complete the analysis with generation of a specific set of graphs for the RNA-Seq differential gene expression analysis. There are caveats:

1. Currently only works with pair-wise comparison.
2. The package has worked "on-my-laptop", but your milage may vary. Please create issues if you run into problems.
3. There is a minimal report.pdf, in the qmd directory. That should give a fair idea on how the package can be used or is expected to be used.
4. Feature requests are welcome. There are plans to flesh out the analyses a bit more and hopefully add some functional analyses as well.
5. All comments are welcome.