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Merged
steinnhauser merged 55 commits into from
Oct 23, 2024
Merged

Updating master with most recent package features #2

steinnhauser merged 55 commits into from
Oct 23, 2024

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@steinnhauser
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@steinnhauser steinnhauser commented Oct 23, 2024

Reference issue

Example: Fixes mne-tools#1234.

What does this implement/fix?

Explain your changes.

Additional information

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larsoner and others added 30 commits September 2, 2024 20:48
@larsoner
MAINT: Fix for dipy deprecation (#12823)
e221c6c
@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate (#12825)
3f1c780 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@mscheltienne
Fix docstring typos (#12826)
013d6c9
@sappelhoff @pre-commit-ci
Add update to .elc montage reader (#12830)
3ecdd6b 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@larsoner
MAINT: No sklearn nightly for now (#12832)
c46733a
@tsbinns
[API] Deprecate average parameter from CSP and SPoC plotting methods (#…
c993ae5 
…12829)
@tsbinns @larsoner @pre-commit-ci
[DOC] Fix misleading fit_transform docstrings (#12827)
f3a3ca4 
Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@cbrnr
Disable unicode symbols in mne.sys_info() on Windows (#12838)
5cd5299
@cbrnr
Determine total memory without psutil (#12787)
828953e
@sappelhoff @larsoner
hotfix elc reader (#12839)
ebab915 
Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
@pre-commit-ci @larsoner
[pre-commit.ci] pre-commit autoupdate (#12837)
9a2f887 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
@larsoner @autofix-ci
MAINT: Remove BaseEstimator (#12834)
5425ef4 
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
@mscheltienne
[MRG] Add additional tests for ant reader (#12841)
528e046
@larsoner
MAINT: Improve PR template (#12833)
2f29927
@scott-huberty
Use SI units for eyetracking data, update tutorials (#12846)
670330a
@tsbinns
[BUG] Allow Epochs.compute_tfr() for the multitaper method and comp…
e999e85 
…lex/phase outputs (#12842)
@pre-commit-ci @larsoner
[pre-commit.ci] pre-commit autoupdate (#12856)
efbd972 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
@scott-huberty @sappelhoff
FIX: use meters for pupil SI, not moles (#12850)
4f58e81 
Co-authored-by: Stefan Appelhoff <stefan.appelhoff@mailbox.org>
@tsbinns
[BUG] Fix ignored colorbar flag in plot_psds_topomap() (#12853)
2cab025
@larsoner
DOC: Document installer uninstallation (#12845)
efe8b6a
@sappelhoff @cbrnr
DOC: impedances may be obtained for BrainVision (#12861)
fa841cb 
Co-authored-by: Clemens Brunner <clemens.brunner@gmail.com>
@tsbinns
[MAINT] Update minimum Python version to 3.10 in environment.yml (#…
e6f9c5d 
…12865)
@sappelhoff @cbrnr
DOC: ICA -> fix typo, add func ref, use list (#12860)
6f9646f 
Co-authored-by: Clemens Brunner <clemens.brunner@gmail.com>
@sappelhoff
scale figsize in plot_events depending on n unique events (#12844)
a218f96
@sappelhoff @pre-commit-ci
@cbrnr @larsoner
Let users run find_bads_muscle also when no sensor positions are av…
b9cdca8 
…ailable (#12862)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Clemens Brunner <clemens.brunner@gmail.com>
Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
@sappelhoff
FIX: limit ncols to a reasonable max in plot_events (#12867)
fc05aeb
@drammock
fix HTML repr table rendering (#12788)
dcb05a2
@sappelhoff
DOC: clean up ECG ICA docstrs (#12866)
ab25168
@pre-commit-ci @mscheltienne
[pre-commit.ci] pre-commit autoupdate (#12869)
1dd07a4 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Mathieu Scheltienne <mathieu.scheltienne@gmail.com>
@mscheltienne @autofix-ci
@larsoner @drammock
[MRG] Remove impedances in ant reader in favor of an example using an…
d248a57 
…tio (#12868)

Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
Co-authored-by: Daniel McCloy <dan@mccloy.info>
qian-chu and others added 25 commits September 24, 2024 10:47
@qian-chu @pre-commit-ci
@AlexLepauvre @drammock @larsoner
Add support for dictionary-type ref_channels in `set_eeg_reference(…
d917be1 
…)` (#12366)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Alex Lepauvre <alexander.lepauvre@ad.aesthetics.mpg.de>
Co-authored-by: Qian Chu <qian.chu@ad.aesthetics.mpg.de>
Co-authored-by: Alex Lepauvre <alex.lepauvre@ae.mpg.de>
Co-authored-by: Daniel McCloy <dan@mccloy.info>
Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
@mscheltienne @larsoner
Add toml-sort to sort pyproject.toml (#12870)
50ce70a 
Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
@larsoner @autofix-ci
ENH: Add some options for 3D renderer titles (#12871)
381688f 
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
@mscheltienne @larsoner
Use Path in raw.filenames and epochs.filename (#12843)
10ff91a 
Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
@larsoner @drammock @autofix-ci
ENH: Better validation of info and subject_info (#12875)
5492174 
Co-authored-by: Daniel McCloy <dan@mccloy.info>
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
@larsoner
BUG: Fix bug with Path casting (#12878)
8379668
@github-actions
MAINT: Update code credit (#12880)
717bd1a 
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate (#12879)
099cf60 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@mscheltienne @drammock
[MRG] Require good and bad channels when creating a SpectrumArray obj…
7af60e6 
…ect (#12877)

Co-authored-by: Daniel McCloy <dan@mccloy.info>
@drammock
Update roadmap (#12872)
78ea8b7
@larsoner
MAINT: Linkchecks [circle deploy] (#12882)
7e197c7
@drammock
make HTML repr for Forward match others (#12883)
ed933b8
@mscheltienne
Update spacing for comments in pyproject.toml (#12886)
d4c0d1c
@dependabot
Bump mamba-org/setup-micromamba from 1 to 2 in the actions group (#12887
94fc435 
)

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@larsoner @autofix-ci
BUG: Fix bugs with coreg (#12884)
bddaad9 
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate (#12888)
c0a98ed 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@drammock
Website (#12885)
53f258d
@mscheltienne
Cast tuple of filenames to list to improve error handling (#12891)
06050bc
@drammock
remove trailing slash from pybv base URL [ci skip] (#12892)
72faa3c
@drammock @autofix-ci
Sync README dependencies with pyproject.toml (#12890)
922a780 
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
@larsoner
MAINT: Avoid problematic PySide6 (#12902)
f35aa5a
@larsoner @autofix-ci @drammock
ENH: Improve report usability (#12901)
56e522b 
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
Co-authored-by: Daniel McCloy <dan@mccloy.info>
@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate (#12908)
18c0d44 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@cbrnr
Fix GDF NumPy >= 2 (#12909)
97f5b9c
@scholzri @pre-commit-ci
Add psd_args to plot_ica_sources and ICA.plot_sources (#12912)
c63da99 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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steinnhauser commented Oct 23, 2024

LGTM! 🍪 No code review necessary

@steinnhauser steinnhauser merged commit 38b6b6a into emma-bailey:main Oct 23, 2024
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10 participants

@steinnhauser @larsoner @mscheltienne @sappelhoff @tsbinns @cbrnr @scott-huberty @drammock @qian-chu @scholzri